PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2570s0105.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YA
Protein Properties Length: 295aa    MW: 32040 Da    PI: 10.066
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2570s0105.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.32.8e-29136195258
            CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           ++YVN+KQy++I++RRq+Rak+ +   +kkl++++rkpy+h+SRh hAlrRpRgsgGrF
  Bostr.2570s0105.1.p 136 GTIYVNSKQYHAIIRRRQSRAKASAvldQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRF 195
                          689*********************9999*******************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.7E-31133198IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.884134198IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-23137195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-21137159IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-21172195IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAMQTMREGL FSAPQTSWCY AFGSQPLAQE SLAGDSDSFS GVKVGSAGET EQGVAKQSNS  60
ATHLAFSLGD VKSSRVVSKP HGAAFSMQSP SLELGFTHPP IYTKYPYGEQ QYYGVVSAYG  120
SQSRVMIPLN METEDGTIYV NSKQYHAIIR RRQSRAKASA VLDQKKLSSR CRKPYMHHSR  180
HLHALRRPRG SGGRFLNTKS QNLEKSGNNA KKADGNKQIQ SQPKPQQSNS QNSEVVHPES  240
GTMNLSNGLN VTGSEVTSMN YFLSSPVHSL GGMVMPSKWM AAAAMDNGCC NFKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A4e-16135196260HAPB protein
4g92_A4e-16135196260HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0260620.0BT026062.1 Arabidopsis thaliana At3g05690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430980.10.0PREDICTED: nuclear transcription factor Y subunit A-2
RefseqXP_010430951.10.0PREDICTED: nuclear transcription factor Y subunit A-2
SwissprotQ9M9X40.0NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLR0HMJ60.0R0HMJ6_9BRAS; Uncharacterized protein
STRINGAT3G05690.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.10.0nuclear factor Y, subunit A2